IL_8RD8_018

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RD8_018 not in the Motif Atlas

Homologous match to IL_5J7L_256

Geometric discrepancy: 0.0926

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

8RD8|1|Z2|G|519
8RD8|1|Z2|G|520
8RD8|1|Z2|A|521
8RD8|1|Z2|G|522
*
8RD8|1|Z2|U|539
8RD8|1|Z2|G|540
8RD8|1|Z2|A|541
8RD8|1|Z2|C|542

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain IX

Large ribosomal subunit protein uL13

Chain PO

Large ribosomal subunit protein bL20