IL_8RD8_030

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

ACGAA*UAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RD8_030 not in the Motif Atlas

Geometric match to IL_8B0X_147

Geometric discrepancy: 0.3136

The information below is about IL_8B0X_147

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14250.1

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

10

Unit IDs

8RD8|1|Z2|A|828
8RD8|1|Z2|C|829
8RD8|1|Z2|G|830
8RD8|1|Z2|A|831
8RD8|1|Z2|A|832
*
8RD8|1|Z2|U|917
8RD8|1|Z2|A|918
8RD8|1|Z2|U|919

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain YW

Large ribosomal subunit protein uL30