IL_8RD8_040

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

UUC*GA

Length

5 nucleotides

Bulged bases

8RD8|1|Z2|U|996

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RD8_040 not in the Motif Atlas

Homologous match to IL_5J7L_279

Geometric discrepancy: 0.1198

The information below is about IL_5J7L_279

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8RD8|1|Z2|U|995
8RD8|1|Z2|U|996
8RD8|1|Z2|C|997
*
8RD8|1|Z2|G|1134
8RD8|1|Z2|A|1135

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain IX

Large ribosomal subunit protein uL13

Chain PO

Large ribosomal subunit protein bL20