IL_8RD8_041
3D structure
- PDB id
- 8RD8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- UUAAGUG*CUCAAA
- Length
- 13 nucleotides
- Bulged bases
- 8RD8|1|Z2|C|1126, 8RD8|1|Z2|A|1128
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RD8_041 not in the Motif Atlas
- Homologous match to IL_7RQB_039
- Geometric discrepancy: 0.0494
- The information below is about IL_7RQB_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_57188.3
- Basepair signature
- cWW-cSH-tWW-L-tWW-cWW-cSH
- Number of instances in this motif group
- 5
Unit IDs
8RD8|1|Z2|U|1002
8RD8|1|Z2|U|1003
8RD8|1|Z2|A|1004
8RD8|1|Z2|A|1005
8RD8|1|Z2|G|1006
8RD8|1|Z2|U|1007
8RD8|1|Z2|G|1008
*
8RD8|1|Z2|C|1124
8RD8|1|Z2|U|1125
8RD8|1|Z2|C|1126
8RD8|1|Z2|A|1127
8RD8|1|Z2|A|1128
8RD8|1|Z2|A|1129
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain IX
- Large ribosomal subunit protein uL13
- Chain ep
- Large ribosomal subunit protein bL36
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