IL_8RD8_042
3D structure
- PDB id
- 8RD8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- GGGAAAC*GGAAGAUGUAACGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 8RD8|1|Z2|A|1111, 8RD8|1|Z2|U|1114
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RD8_042 not in the Motif Atlas
- Geometric match to IL_5J7L_281
- Geometric discrepancy: 0.065
- The information below is about IL_5J7L_281
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.3
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
8RD8|1|Z2|G|1008
8RD8|1|Z2|G|1009
8RD8|1|Z2|G|1010
8RD8|1|Z2|A|1011
8RD8|1|Z2|A|1012
8RD8|1|Z2|A|1013
8RD8|1|Z2|C|1014
*
8RD8|1|Z2|G|1108
8RD8|1|Z2|G|1109
8RD8|1|Z2|A|1110
8RD8|1|Z2|A|1111
8RD8|1|Z2|G|1112
8RD8|1|Z2|A|1113
8RD8|1|Z2|U|1114
8RD8|1|Z2|G|1115
8RD8|1|Z2|U|1116
8RD8|1|Z2|A|1117
8RD8|1|Z2|A|1118
8RD8|1|Z2|C|1119
8RD8|1|Z2|G|1120
8RD8|1|Z2|G|1121
8RD8|1|Z2|G|1122
8RD8|1|Z2|G|1123
8RD8|1|Z2|C|1124
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain Af
- Large ribosomal subunit protein uL3
- Chain IX
- Large ribosomal subunit protein uL13
- Chain Lg
- Large ribosomal subunit protein uL16
- Chain ep
- Large ribosomal subunit protein bL36
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