IL_8RD8_047

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GAAA*UC

Length

6 nucleotides

Bulged bases

8RD8|1|Z2|A|1072

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RD8_047 not in the Motif Atlas

Geometric match to IL_4V9F_044

Geometric discrepancy: 0.1372

The information below is about IL_4V9F_044

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

8RD8|1|Z2|G|1071
8RD8|1|Z2|A|1072
8RD8|1|Z2|A|1073
8RD8|1|Z2|A|1074
*
8RD8|1|Z2|U|1085
8RD8|1|Z2|C|1086

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain ep

Large ribosomal subunit protein bL36