IL_8RD8_052
3D structure
- PDB id
- 8RD8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- GUGAGUAA*UGAAAUC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RD8_052 not in the Motif Atlas
- Homologous match to IL_5J7L_289
- Geometric discrepancy: 0.0743
- The information below is about IL_5J7L_289
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8RD8|1|Z2|G|1246
8RD8|1|Z2|U|1247
8RD8|1|Z2|G|1248
8RD8|1|Z2|A|1249
8RD8|1|Z2|G|1250
8RD8|1|Z2|U|1251
8RD8|1|Z2|A|1252
8RD8|1|Z2|A|1253
*
8RD8|1|Z2|U|1997
8RD8|1|Z2|G|1998
8RD8|1|Z2|A|1999
8RD8|1|Z2|A|2000
8RD8|1|Z2|A|2001
8RD8|1|Z2|U|2002
8RD8|1|Z2|C|2003
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain E9
- Large ribosomal subunit protein uL4
- Chain RF
- Large ribosomal subunit protein uL22
- Chain aA
- Large ribosomal subunit protein bL32
Coloring options: