IL_8RD8_057

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RD8_057 not in the Motif Atlas

Homologous match to IL_5J7L_295

Geometric discrepancy: 0.0987

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

8RD8|1|Z2|C|1401
8RD8|1|Z2|G|1402
8RD8|1|Z2|A|1403
8RD8|1|Z2|U|1404
8RD8|1|Z2|G|1405
*
8RD8|1|Z2|C|1565
8RD8|1|Z2|U|1566
8RD8|1|Z2|A|1567
8RD8|1|Z2|A|1568
8RD8|1|Z2|G|1569

Current chains

Chain Z2

23S rRNA

Nearby chains