IL_8RD8_064
3D structure
- PDB id
- 8RD8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- GAGAAC*GAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RD8_064 not in the Motif Atlas
- Homologous match to IL_5J7L_304
- Geometric discrepancy: 0.0725
- The information below is about IL_5J7L_304
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_12566.4
- Basepair signature
- cWW-L-tHS-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
8RD8|1|Z2|G|1639
8RD8|1|Z2|A|1640
8RD8|1|Z2|G|1641
8RD8|1|Z2|A|1642
8RD8|1|Z2|A|1643
8RD8|1|Z2|C|1644
*
8RD8|1|Z2|G|1990
8RD8|1|Z2|A|1991
8RD8|1|Z2|C|1992
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain Af
- Large ribosomal subunit protein uL3
- Chain MB
- Large ribosomal subunit protein bL17
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