IL_8RD8_072

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

8RD8|1|Z2|A|1787, 8RD8|1|Z2|C|1802, 8RD8|1|Z2|U|1806

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RD8_072 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0538

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8RD8|1|Z2|U|1784
8RD8|1|Z2|G|1785
8RD8|1|Z2|C|1786
8RD8|1|Z2|A|1787
8RD8|1|Z2|A|1788
8RD8|1|Z2|A|1789
8RD8|1|Z2|C|1790
*
8RD8|1|Z2|G|1799
8RD8|1|Z2|G|1800
8RD8|1|Z2|A|1801
8RD8|1|Z2|C|1802
8RD8|1|Z2|G|1803
8RD8|1|Z2|U|1804
8RD8|1|Z2|A|1805
8RD8|1|Z2|U|1806
8RD8|1|Z2|A|1807

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Cl

Large ribosomal subunit protein uL2

Chain iN

Small subunit ribosomal RNA; SSU rRNA