IL_8RD8_078
3D structure
- PDB id
- 8RD8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- CGAAAUUCCUUG*CCUG
- Length
- 16 nucleotides
- Bulged bases
- 8RD8|1|Z2|A|1924, 8RD8|1|Z2|U|1930
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RD8_078 not in the Motif Atlas
- Geometric match to IL_7A0S_072
- Geometric discrepancy: 0.148
- The information below is about IL_7A0S_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.3
- Basepair signature
- cWW-L-R-L-cWW-L-L-R-L-R-L
- Number of instances in this motif group
- 2
Unit IDs
8RD8|1|Z2|C|1920
8RD8|1|Z2|G|1921
8RD8|1|Z2|A|1922
8RD8|1|Z2|A|1923
8RD8|1|Z2|A|1924
8RD8|1|Z2|U|1925
8RD8|1|Z2|U|1926
8RD8|1|Z2|C|1927
8RD8|1|Z2|C|1928
8RD8|1|Z2|U|1929
8RD8|1|Z2|U|1930
8RD8|1|Z2|G|1931
*
8RD8|1|Z2|C|1947
8RD8|1|Z2|C|1948
8RD8|1|Z2|U|1949
8RD8|1|Z2|G|1950
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain B
- Methyl-accepting chemotaxis protein
- Chain Cl
- Large ribosomal subunit protein uL2
- Chain iN
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: