IL_8RD8_110

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

AG*CAU

Length

5 nucleotides

Bulged bases

8RD8|1|iN|A|440

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RD8_110 not in the Motif Atlas

Homologous match to IL_5J7L_002

Geometric discrepancy: 0.0795

The information below is about IL_5J7L_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

8RD8|1|iN|A|91
8RD8|1|iN|G|92
*
8RD8|1|iN|C|439
8RD8|1|iN|A|440
8RD8|1|iN|U|441

Current chains

Chain iN

16S rRNA

Nearby chains

Chain Pj

Small ribosomal subunit protein bS16