IL_8RD8_118

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CUACC*GAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RD8_118 not in the Motif Atlas

Homologous match to IL_5J7L_010

Geometric discrepancy: 0.0844

The information below is about IL_5J7L_010

Detailed Annotation

Minor groove platform related

Broad Annotation

Minor groove platform related

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

8RD8|1|iN|C|177
8RD8|1|iN|U|178
8RD8|1|iN|A|179
8RD8|1|iN|C|180
8RD8|1|iN|C|181
*
8RD8|1|iN|G|270
8RD8|1|iN|A|271
8RD8|1|iN|U|272
8RD8|1|iN|G|273

Current chains

Chain iN

16S rRNA

Nearby chains

Chain Pj

Small ribosomal subunit protein bS16

Chain To

Small ribosomal subunit protein bS20