IL_8RD8_119

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GGG*CGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RD8_119 not in the Motif Atlas

Homologous match to IL_5J7L_011

Geometric discrepancy: 0.1039

The information below is about IL_5J7L_011

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

8RD8|1|iN|G|189
8RD8|1|iN|G|190
8RD8|1|iN|G|191
*
8RD8|1|iN|C|221
8RD8|1|iN|G|222
8RD8|1|iN|C|223

Current chains

Chain iN

16S rRNA

Nearby chains

Chain To

Small ribosomal subunit protein bS20