IL_8RD8_124

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

UUG*CA

Length

5 nucleotides

Bulged bases

8RD8|1|iN|U|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RD8_124 not in the Motif Atlas

Homologous match to IL_5J7L_017

Geometric discrepancy: 0.0872

The information below is about IL_5J7L_017

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8RD8|1|iN|U|410
8RD8|1|iN|U|411
8RD8|1|iN|G|412
*
8RD8|1|iN|C|435
8RD8|1|iN|A|436

Current chains

Chain iN

16S rRNA

Nearby chains

Chain H

Elongation factor Tu

Chain Pj

Small ribosomal subunit protein bS16