IL_8RD8_125

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

ACAAU*AU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RD8_125 not in the Motif Atlas

Geometric match to IL_4LFB_015

Geometric discrepancy: 0.1983

The information below is about IL_4LFB_015

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_26900.2

Basepair signature

cWW-cSH-cWS-tWH-cWW

Number of instances in this motif group

6

Unit IDs

8RD8|1|iN|A|414
8RD8|1|iN|C|415
8RD8|1|iN|A|416
8RD8|1|iN|A|417
8RD8|1|iN|U|418
*
8RD8|1|iN|A|432
8RD8|1|iN|U|433

Current chains

Chain iN

16S rRNA

Nearby chains

Chain Pj

Small ribosomal subunit protein bS16