IL_8RD8_127

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

8RD8|1|iN|A|455

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RD8_127 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1254

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8RD8|1|iN|U|452
8RD8|1|iN|G|453
8RD8|1|iN|A|454
8RD8|1|iN|A|455
8RD8|1|iN|G|456
8RD8|1|iN|A|457
8RD8|1|iN|A|458
8RD8|1|iN|G|459
*
8RD8|1|iN|U|470
8RD8|1|iN|G|471
8RD8|1|iN|U|472
8RD8|1|iN|A|473
8RD8|1|iN|A|474
8RD8|1|iN|A|475
8RD8|1|iN|G|476

Current chains

Chain iN

16S rRNA

Nearby chains

Chain Dm

Small ribosomal subunit protein uS4