IL_8RD8_135

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

UAA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RD8_135 not in the Motif Atlas

Homologous match to IL_5J7L_028

Geometric discrepancy: 0.1173

The information below is about IL_5J7L_028

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

8RD8|1|iN|U|637
8RD8|1|iN|A|638
8RD8|1|iN|A|639
*
8RD8|1|iN|U|688
8RD8|1|iN|G|689

Current chains

Chain iN

16S rRNA

Nearby chains

Chain BQ

Small ribosomal subunit protein uS8

Chain QZ

Small ribosomal subunit protein uS17