IL_8RD8_144

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RD8_144 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.0889

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tWH-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.2

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

19

Unit IDs

8RD8|1|iN|C|823
8RD8|1|iN|A|824
8RD8|1|iN|A|825
8RD8|1|iN|A|826
8RD8|1|iN|C|827
*
8RD8|1|iN|G|843
8RD8|1|iN|G|844
8RD8|1|iN|U|845
8RD8|1|iN|A|846
8RD8|1|iN|G|847

Current chains

Chain iN

16S rRNA

Nearby chains

Chain KU

Small ribosomal subunit protein uS11

Chain NV

Small ribosomal subunit protein bS21

Chain Z2

Large subunit ribosomal RNA; LSU rRNA