IL_8RD8_149

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

UUG*CACA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RD8_149 not in the Motif Atlas

Geometric match to IL_3MXH_001

Geometric discrepancy: 0.333

The information below is about IL_3MXH_001

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_82096.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

8RD8|1|iN|U|996
8RD8|1|iN|U|997
8RD8|1|iN|G|998
*
8RD8|1|iN|C|1271
8RD8|1|iN|A|1272
8RD8|1|iN|C|1273
8RD8|1|iN|A|1274

Current chains

Chain iN

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S30

Chain MM

Small ribosomal subunit protein uS13

Chain SP

Small ribosomal subunit protein uS19