IL_8RD8_169

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RD8_169 not in the Motif Atlas

Homologous match to IL_5J7L_062

Geometric discrepancy: 0.0617

The information below is about IL_5J7L_062

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

8RD8|1|iN|G|1461
8RD8|1|iN|G|1462
8RD8|1|iN|A|1463
8RD8|1|iN|G|1464
*
8RD8|1|iN|U|1526
8RD8|1|iN|G|1527
8RD8|1|iN|A|1528
8RD8|1|iN|C|1529

Current chains

Chain iN

16S rRNA

Nearby chains

Chain Z2

Large subunit ribosomal RNA; LSU rRNA