IL_8RDW_013

3D structure

PDB id

8RDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

AUG*CAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AUG,CAU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDW_013 not in the Motif Atlas

Geometric match to IL_5MWI_005

Geometric discrepancy: 0.1319

The information below is about IL_5MWI_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

8RDW|1|Z2|A|277
8RDW|1|Z2|U|278
8RDW|1|Z2|G|279
*
8RDW|1|Z2|C|335
8RDW|1|Z2|A|336
8RDW|1|Z2|U|337

Current chains

Chain Z2

23S rRNA

Nearby chains