IL_8RDW_036
3D structure
- PDB id
- 8RDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.74 Å
Loop
- Sequence
- CUAAG*CGAAG
- Length
- 10 nucleotides
- Bulged bases
- 8RDW|1|Z2|A|1141
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RDW_036 not in the Motif Atlas
- Homologous match to IL_5J7L_277
- Geometric discrepancy: 0.0593
- The information below is about IL_5J7L_277
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_38507.2
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
8RDW|1|Z2|C|982
8RDW|1|Z2|U|983
8RDW|1|Z2|A|984
8RDW|1|Z2|A|985
8RDW|1|Z2|G|986
*
8RDW|1|Z2|C|1138
8RDW|1|Z2|G|1139
8RDW|1|Z2|A|1140
8RDW|1|Z2|A|1141
8RDW|1|Z2|G|1142
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain D8
- 5S ribosomal RNA; 5S rRNA
- Chain PO
- Large ribosomal subunit protein bL20
- Chain Qb
- Large ribosomal subunit protein bL21
- Chain YW
- Large ribosomal subunit protein uL30
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