IL_8RDW_071

3D structure

PDB id

8RDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

8RDW|1|Z2|A|1787, 8RDW|1|Z2|C|1802, 8RDW|1|Z2|U|1806

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDW_071 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0644

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8RDW|1|Z2|U|1784
8RDW|1|Z2|G|1785
8RDW|1|Z2|C|1786
8RDW|1|Z2|A|1787
8RDW|1|Z2|A|1788
8RDW|1|Z2|A|1789
8RDW|1|Z2|C|1790
*
8RDW|1|Z2|G|1799
8RDW|1|Z2|G|1800
8RDW|1|Z2|A|1801
8RDW|1|Z2|C|1802
8RDW|1|Z2|G|1803
8RDW|1|Z2|U|1804
8RDW|1|Z2|A|1805
8RDW|1|Z2|U|1806
8RDW|1|Z2|A|1807

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Cl

Large ribosomal subunit protein uL2

Chain iN

Small subunit ribosomal RNA; SSU rRNA