IL_8RDW_092

3D structure

PDB id

8RDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDW_092 not in the Motif Atlas

Homologous match to IL_5J7L_338

Geometric discrepancy: 0.1159

The information below is about IL_5J7L_338

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8RDW|1|Z2|C|2449
8RDW|1|Z2|C|2450
8RDW|1|Z2|A|2451
8RDW|1|Z2|A|2452
8RDW|1|Z2|G|2453
*
8RDW|1|Z2|C|2463
8RDW|1|Z2|G|2464
8RDW|1|Z2|A|2465
8RDW|1|Z2|C|2466
8RDW|1|Z2|G|2467

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain B

Methyl-accepting chemotaxis protein

Chain Lg

Large ribosomal subunit protein uL16

Chain ep

Large ribosomal subunit protein bL36