IL_8RDW_097

3D structure

PDB id

8RDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

GAA*UUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GAA,UUC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDW_097 not in the Motif Atlas

Geometric match to IL_3SZX_003

Geometric discrepancy: 0.1586

The information below is about IL_3SZX_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

8RDW|1|Z2|G|2571
8RDW|1|Z2|A|2572
8RDW|1|Z2|A|2573
*
8RDW|1|Z2|U|2587
8RDW|1|Z2|U|2588
8RDW|1|Z2|C|2589

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain B

Methyl-accepting chemotaxis protein

Chain Cl

Large ribosomal subunit protein uL2