IL_8RDW_109
3D structure
- PDB id
- 8RDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.74 Å
Loop
- Sequence
- UGGAAG*UGUAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RDW_109 not in the Motif Atlas
- Homologous match to IL_4WF9_108
- Geometric discrepancy: 0.1846
- The information below is about IL_4WF9_108
- Detailed Annotation
- tHS double platform
- Broad Annotation
- No text annotation
- Motif group
- IL_48489.2
- Basepair signature
- cWW-tSH-L-tHH-L-cWW
- Number of instances in this motif group
- 9
Unit IDs
8RDW|1|Z2|U|2813
8RDW|1|Z2|G|2814
8RDW|1|Z2|G|2815
8RDW|1|Z2|A|2816
8RDW|1|Z2|A|2817
8RDW|1|Z2|G|2818
*
8RDW|1|Z2|U|2831
8RDW|1|Z2|G|2832
8RDW|1|Z2|U|2833
8RDW|1|Z2|A|2834
8RDW|1|Z2|G|2835
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain MB
- Large ribosomal subunit protein bL17
- Chain Oi
- Large ribosomal subunit protein bL19
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