IL_8RDW_110

3D structure

PDB id

8RDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

AUU*AAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AUU,AAU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDW_110 not in the Motif Atlas

Geometric match to IL_4YHW_001

Geometric discrepancy: 0.1693

The information below is about IL_4YHW_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8RDW|1|iN|A|75
8RDW|1|iN|U|76
8RDW|1|iN|U|77
*
8RDW|1|iN|A|596
8RDW|1|iN|A|597
8RDW|1|iN|U|598

Current chains

Chain iN

16S rRNA

Nearby chains

Chain Dm

Small ribosomal subunit protein uS4

Chain L6

Small ribosomal subunit protein uS12