IL_8RDW_130

3D structure

PDB id

8RDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

8RDW|1|iN|A|455

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDW_130 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1377

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8RDW|1|iN|U|452
8RDW|1|iN|G|453
8RDW|1|iN|A|454
8RDW|1|iN|A|455
8RDW|1|iN|G|456
8RDW|1|iN|A|457
8RDW|1|iN|A|458
8RDW|1|iN|G|459
*
8RDW|1|iN|U|470
8RDW|1|iN|G|471
8RDW|1|iN|U|472
8RDW|1|iN|A|473
8RDW|1|iN|A|474
8RDW|1|iN|A|475
8RDW|1|iN|G|476

Current chains

Chain iN

16S rRNA

Nearby chains

Chain Dm

Small ribosomal subunit protein uS4