IL_8RDW_147

3D structure

PDB id

8RDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDW_147 not in the Motif Atlas

Homologous match to IL_5J7L_037

Geometric discrepancy: 0.0823

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

8RDW|1|iN|C|823
8RDW|1|iN|A|824
8RDW|1|iN|A|825
8RDW|1|iN|A|826
8RDW|1|iN|C|827
*
8RDW|1|iN|G|843
8RDW|1|iN|G|844
8RDW|1|iN|U|845
8RDW|1|iN|A|846
8RDW|1|iN|G|847

Current chains

Chain iN

16S rRNA

Nearby chains

Chain KU

Small ribosomal subunit protein uS11

Chain NV

Small ribosomal subunit protein bS21

Chain Z2

Large subunit ribosomal RNA; LSU rRNA