IL_8RDW_161

3D structure

PDB id

8RDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

UUAG*CUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UUAG,CUAA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDW_161 not in the Motif Atlas

Geometric match to IL_3NDB_001

Geometric discrepancy: 0.3498

The information below is about IL_3NDB_001

Detailed Annotation

Self complementary

Broad Annotation

Self complementary

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

8RDW|1|iN|U|1165
8RDW|1|iN|U|1166
8RDW|1|iN|A|1167
8RDW|1|iN|G|1168
*
8RDW|1|iN|C|1194
8RDW|1|iN|U|1195
8RDW|1|iN|A|1196
8RDW|1|iN|A|1197

Current chains

Chain iN

16S rRNA

Nearby chains

Chain F

Small ribosomal subunit protein uS9

Chain JY

Small ribosomal subunit protein uS10