IL_8RDW_163

3D structure

PDB id

8RDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

CUGC*GAGGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDW_163 not in the Motif Atlas

Geometric match to IL_5J7L_053

Geometric discrepancy: 0.1295

The information below is about IL_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42032.1

Basepair signature

cWW-cSH-cWW-tWH-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

8RDW|1|iN|C|1203
8RDW|1|iN|U|1204
8RDW|1|iN|G|1205
8RDW|1|iN|C|1206
*
8RDW|1|iN|G|1220
8RDW|1|iN|A|1221
8RDW|1|iN|G|1222
8RDW|1|iN|G|1223
8RDW|1|iN|A|1224
8RDW|1|iN|A|1225
8RDW|1|iN|G|1226

Current chains

Chain iN

16S rRNA

Nearby chains

Chain A4

Small ribosomal subunit protein uS2

Chain F

Small ribosomal subunit protein uS9