IL_8RDW_171

3D structure

PDB id

8RDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

8RDW|1|iN|A|1538

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDW_171 not in the Motif Atlas

Geometric match to IL_5VCI_005

Geometric discrepancy: 0.3544

The information below is about IL_5VCI_005

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_64417.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

18

Unit IDs

8RDW|1|iN|C|1452
8RDW|1|iN|A|1453
8RDW|1|iN|C|1454
*
8RDW|1|iN|G|1536
8RDW|1|iN|A|1537
8RDW|1|iN|A|1538
8RDW|1|iN|G|1539

Current chains

Chain iN

16S rRNA

Nearby chains

Chain B

Methyl-accepting chemotaxis protein

Chain L6

Small ribosomal subunit protein uS12

Chain Z2

Large subunit ribosomal RNA; LSU rRNA