IL_8RFJ_002

3D structure

PDB id

8RFJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

DNA bound type IV-A1 CRISPR effector complex with the DinG helicase from P. oleovorans

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

CAAG*CTTG

Length

8 nucleotides

Bulged bases

8RFJ|1|H|A|6, 8RFJ|1|I|DT|-6

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RFJ|1|H|C|5
8RFJ|1|H|A|6
8RFJ|1|H|A|7
8RFJ|1|H|G|8
*
8RFJ|1|I|DC|-8
8RFJ|1|I|DT|-7
8RFJ|1|I|DT|-6
8RFJ|1|I|DG|-5

Current chains

Chain H

crRNA

Chain I

Target strand (TS-)DNA

Nearby chains

Chain A

CRISPR type AFERR-associated protein Csf2

Chain B

CRISPR type AFERR-associated protein Csf2

Chain C

CRISPR type AFERR-associated protein Csf2