IL_8RFJ_010
3D structure
- PDB id
- 8RFJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- DNA bound type IV-A1 CRISPR effector complex with the DinG helicase from P. oleovorans
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.18 Å
Loop
- Sequence
- GTG*CAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8RFJ|1|I|DG|4
8RFJ|1|I|DT|5
8RFJ|1|I|DG|6
*
8RFJ|1|J|DC|-6
8RFJ|1|J|DA|-5
8RFJ|1|J|DC|-4
Current chains
- Chain I
- Target strand (TS-)DNA
- Chain J
- Non-target strand (NTS-) DNA
Nearby chains
- Chain A
- CRISPR type AFERR-associated protein Csf2
- Chain B
- CRISPR type AFERR-associated protein Csf2
- Chain F
- CRISPR type AFERR-associated protein Csf3
- Chain G
- CRISPR type AFERR-associated protein Csf1
Coloring options: