IL_8RG0_006
3D structure
- PDB id
- 8RG0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human eIF3 core from closed 48S translation initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GCG*CC
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RG0_006 not in the Motif Atlas
- Geometric match to IL_4V88_388
- Geometric discrepancy: 0.2487
- The information below is about IL_4V88_388
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_18604.1
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 46
Unit IDs
8RG0|1|A|G|1108
8RG0|1|A|C|1109
8RG0|1|A|G|1110
*
8RG0|1|A|C|1123
8RG0|1|A|C|1124
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain H
- 40S ribosomal protein S27
- Chain M
- 40S ribosomal protein S17
- Chain N
- 40S ribosomal protein SA
- Chain O
- 40S ribosomal protein S3a
- Chain x
- Eukaryotic translation initiation factor 3 subunit D
- Chain y
- Eukaryotic translation initiation factor 3 subunit C
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