IL_8RJB_029

3D structure

PDB id

8RJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69243 Å

Loop

Sequence

GAU*AC

Length

5 nucleotides

Bulged bases

8RJB|1|K|A|509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RJB_029 not in the Motif Atlas

Geometric match to IL_6WPI_001

Geometric discrepancy: 0.2412

The information below is about IL_6WPI_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

8RJB|1|K|G|508
8RJB|1|K|A|509
8RJB|1|K|U|510
*
8RJB|1|K|A|649
8RJB|1|K|C|650

Current chains

Chain K

28S rRNA

Nearby chains

Chain L

60S ribosomal protein L13

Chain a

60S ribosomal protein L27a