IL_8RJB_046

3D structure

PDB id

8RJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69243 Å

Loop

Sequence

GG*CGCC

Length

6 nucleotides

Bulged bases

8RJB|1|K|C|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RJB_046 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.2018

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

8RJB|1|K|G|1360
8RJB|1|K|G|1361
*
8RJB|1|K|C|1376
8RJB|1|K|G|1377
8RJB|1|K|C|1378
8RJB|1|K|C|1379

Current chains

Chain K

28S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL4

Chain L

60S ribosomal protein L13

Chain N

Ribosomal protein L15