IL_8RJB_057

3D structure

PDB id

8RJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69243 Å

Loop

Sequence

GGUC*GUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RJB_057 not in the Motif Atlas

Homologous match to IL_8C3A_034

Geometric discrepancy: 0.0651

The information below is about IL_8C3A_034

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

8RJB|1|K|G|1586
8RJB|1|K|G|1587
8RJB|1|K|U|1588
8RJB|1|K|C|1589
*
8RJB|1|K|G|1605
8RJB|1|K|U|1606
8RJB|1|K|C|1607

Current chains

Chain K

28S rRNA

Nearby chains

Chain j

Ribosomal protein L37

Chain w

Ribosomal protein L3