IL_8RJB_150

3D structure

PDB id

8RJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69243 Å

Loop

Sequence

UU*AAUG

Length

6 nucleotides

Bulged bases

8RJB|1|K|A|4656, 8RJB|1|K|U|4657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RJB_150 not in the Motif Atlas

Homologous match to IL_5TBW_119

Geometric discrepancy: 0.2325

The information below is about IL_5TBW_119

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

8RJB|1|K|U|4641
8RJB|1|K|U|4642
*
8RJB|1|K|A|4655
8RJB|1|K|A|4656
8RJB|1|K|U|4657
8RJB|1|K|G|4658

Current chains

Chain K

28S rRNA

Nearby chains

Chain R

Ribosomal protein L19

Chain d

60S ribosomal protein L31