IL_8RJB_179

3D structure

PDB id

8RJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69243 Å

Loop

Sequence

UAUAGACAGCAG*CCUGCCGAA

Length

21 nucleotides

Bulged bases

8RJB|1|K|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RJB|1|K|U|1957
8RJB|1|K|A|1958
8RJB|1|K|U|1959
8RJB|1|K|A|1960
8RJB|1|K|G|1961
8RJB|1|K|A|1962
8RJB|1|K|C|1963
8RJB|1|K|A|1964
8RJB|1|K|G|1965
8RJB|1|K|C|1966
8RJB|1|K|A|1967
8RJB|1|K|G|1968
*
8RJB|1|K|C|2018
8RJB|1|K|C|2019
8RJB|1|K|U|2020
8RJB|1|K|G|2021
8RJB|1|K|C|2022
8RJB|1|K|C|2023
8RJB|1|K|G|2024
8RJB|1|K|A|2025
8RJB|1|K|A|2026

Current chains

Chain K

28S rRNA

Nearby chains

Chain m

eL40