IL_8RJD_016
3D structure
- PDB id
- 8RJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78574 Å
Loop
- Sequence
- GAAC*GAGUUCAAGAGGGC
- Length
- 18 nucleotides
- Bulged bases
- 8RJD|1|K|G|409, 8RJD|1|K|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RJD_016 not in the Motif Atlas
- Homologous match to IL_5TBW_014
- Geometric discrepancy: 0.1435
- The information below is about IL_5TBW_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
8RJD|1|K|G|387
8RJD|1|K|A|388
8RJD|1|K|A|389
8RJD|1|K|C|390
*
8RJD|1|K|G|401
8RJD|1|K|A|402
8RJD|1|K|G|403
8RJD|1|K|U|404
8RJD|1|K|U|405
8RJD|1|K|C|406
8RJD|1|K|A|407
8RJD|1|K|A|408
8RJD|1|K|G|409
8RJD|1|K|A|410
8RJD|1|K|G|411
8RJD|1|K|G|412
8RJD|1|K|G|413
8RJD|1|K|C|414
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain 1
- Protein transport protein Sec61 subunit alpha isoform 1
- Chain B
- Nascent chain
- Chain P
- uL22
- Chain Y
- Ribosomal protein L26
- Chain l
- 60S ribosomal protein L39-like
- Chain v
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: