IL_8RJD_017
3D structure
- PDB id
- 8RJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78574 Å
Loop
- Sequence
- GUGAAAC*GUGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RJD_017 not in the Motif Atlas
- Homologous match to IL_5TBW_015
- Geometric discrepancy: 0.0826
- The information below is about IL_5TBW_015
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8RJD|1|K|G|415
8RJD|1|K|U|416
8RJD|1|K|G|417
8RJD|1|K|A|418
8RJD|1|K|A|419
8RJD|1|K|A|420
8RJD|1|K|C|421
*
8RJD|1|v|G|13
8RJD|1|v|U|14
8RJD|1|v|G|15
8RJD|1|v|G|16
8RJD|1|v|A|17
8RJD|1|v|U|18
8RJD|1|v|C|19
Current chains
- Chain K
- 28S rRNA
- Chain v
- 5.8S rRNA
Nearby chains
- Chain C
- Large ribosomal subunit protein uL4
- Chain P
- uL22
- Chain e
- Ribosomal protein L32
Coloring options: