IL_8RJD_018

3D structure

PDB id

8RJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78574 Å

Loop

Sequence

GGUC*GCUAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RJD_018 not in the Motif Atlas

Geometric match to IL_4PHY_003

Geometric discrepancy: 0.3959

The information below is about IL_4PHY_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_99358.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

8RJD|1|K|G|443
8RJD|1|K|G|444
8RJD|1|K|U|445
8RJD|1|K|C|446
*
8RJD|1|K|G|1300
8RJD|1|K|C|1301
8RJD|1|K|U|1302
8RJD|1|K|A|1303
8RJD|1|K|C|1304

Current chains

Chain K

28S rRNA

Nearby chains

Chain e

Ribosomal protein L32

Chain f

60S ribosomal protein L35a

Chain v

5.8S ribosomal RNA; 5.8S rRNA