IL_8RJD_034

3D structure

PDB id

8RJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78574 Å

Loop

Sequence

AAGG*CAGCAGCAGCU

Length

15 nucleotides

Bulged bases

8RJD|1|K|A|932, 8RJD|1|K|C|936

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RJD|1|K|A|732
8RJD|1|K|A|733
8RJD|1|K|G|734
8RJD|1|K|G|735
*
8RJD|1|K|C|928
8RJD|1|K|A|929
8RJD|1|K|G|930
8RJD|1|K|C|931
8RJD|1|K|A|932
8RJD|1|K|G|933
8RJD|1|K|C|934
8RJD|1|K|A|935
8RJD|1|K|G|935|||A
8RJD|1|K|C|936
8RJD|1|K|U|937

Current chains

Chain K

28S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL4

Chain M

60S ribosomal protein L14

Chain S

60S ribosomal protein L18a