IL_8RJD_081

3D structure

PDB id

8RJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78574 Å

Loop

Sequence

UAUAGACAG*CGAA

Length

13 nucleotides

Bulged bases

8RJD|1|K|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RJD|1|K|U|1957
8RJD|1|K|A|1958
8RJD|1|K|U|1959
8RJD|1|K|A|1960
8RJD|1|K|G|1961
8RJD|1|K|A|1962
8RJD|1|K|C|1963
8RJD|1|K|A|1964
8RJD|1|K|G|1965
*
8RJD|1|K|C|2023
8RJD|1|K|G|2024
8RJD|1|K|A|2025
8RJD|1|K|A|2026

Current chains

Chain K

28S rRNA

Nearby chains

Chain m

eL40