IL_8RJD_087
3D structure
- PDB id
- 8RJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78574 Å
Loop
- Sequence
- CCUUGAAG*UGGAG
- Length
- 13 nucleotides
- Bulged bases
- 8RJD|1|K|U|2305
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RJD_087 not in the Motif Atlas
- Homologous match to IL_5TBW_059
- Geometric discrepancy: 0.1317
- The information below is about IL_5TBW_059
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.5
- Basepair signature
- cWW-cWW-tSS-tSH-tHS-cWW-tHS
- Number of instances in this motif group
- 32
Unit IDs
8RJD|1|K|C|2302
8RJD|1|K|C|2303
8RJD|1|K|U|2304
8RJD|1|K|U|2305
8RJD|1|K|G|2306
8RJD|1|K|A|2307
8RJD|1|K|A|2308
8RJD|1|K|G|2309
*
8RJD|1|K|U|2329
8RJD|1|K|G|2330
8RJD|1|K|G|2331
8RJD|1|K|A|2332
8RJD|1|K|G|2333
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain C
- Large ribosomal subunit protein uL4
- Chain Y
- Ribosomal protein L26
- Chain e
- Ribosomal protein L32
- Chain v
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: