IL_8RJD_123
3D structure
- PDB id
- 8RJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78574 Å
Loop
- Sequence
- GUGAGGC*GCUC
- Length
- 11 nucleotides
- Bulged bases
- 8RJD|1|K|G|4084, 8RJD|1|K|C|4162, 8RJD|1|K|U|4163
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RJD_123 not in the Motif Atlas
- Homologous match to IL_8C3A_106
- Geometric discrepancy: 0.2028
- The information below is about IL_8C3A_106
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74114.1
- Basepair signature
- cWW-cWS-cWW-L-R
- Number of instances in this motif group
- 2
Unit IDs
8RJD|1|K|G|4082
8RJD|1|K|U|4083
8RJD|1|K|G|4084
8RJD|1|K|A|4085
8RJD|1|K|G|4086
8RJD|1|K|G|4087
8RJD|1|K|C|4088
*
8RJD|1|K|G|4161
8RJD|1|K|C|4162
8RJD|1|K|U|4163
8RJD|1|K|C|4164
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain A
- Ribosomal protein L8
- Chain G
- 60S ribosomal protein L7a
- Chain X
- Large ribosomal subunit protein uL23 N-terminal domain-containing protein
- Chain v
- 5.8S ribosomal RNA; 5.8S rRNA
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