IL_8RJD_139

3D structure

PDB id

8RJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78574 Å

Loop

Sequence

UUG*CCAAG

Length

8 nucleotides

Bulged bases

8RJD|1|K|A|4488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RJD_139 not in the Motif Atlas

Geometric match to IL_8GLP_150

Geometric discrepancy: 0.0756

The information below is about IL_8GLP_150

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09353.2

Basepair signature

cWW-cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

8RJD|1|K|U|4468
8RJD|1|K|U|4469
8RJD|1|K|G|4470
*
8RJD|1|K|C|4485
8RJD|1|K|C|4486
8RJD|1|K|A|4487
8RJD|1|K|A|4488
8RJD|1|K|G|4489

Current chains

Chain K

28S rRNA

Nearby chains

Chain H

60S ribosomal protein L9

Chain O

60S ribosomal protein L13a

Chain m

eL40