IL_8RJD_140

3D structure

PDB id

8RJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78574 Å

Loop

Sequence

GAU*ACC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RJD_140 not in the Motif Atlas

Homologous match to IL_8C3A_120

Geometric discrepancy: 0.0979

The information below is about IL_8C3A_120

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8RJD|1|K|G|4495
8RJD|1|K|A|4496
8RJD|1|K|U|4497
*
8RJD|1|K|A|4503
8RJD|1|K|C|4504
8RJD|1|K|C|4505

Current chains

Chain K

28S rRNA

Nearby chains

Chain V

Ribosomal protein L23

Chain w

Ribosomal protein L3